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ncRNA Finder

1. AI models for RNA

  • RiNALMo
  • HydraRNA
  • RNAErnie
  • Ernie-RNA
  • structRFM

  • ✅ [Review] 2025 Nature Reviews - Decoding the interactions and functions of non-coding RNA with artificial intelligence

  • 2025 Nature Communications - ERNIE-RNA: an RNA language model with structure-enhanced representations

  • 2025 Nature Communications - RiNALMo: general-purpose RNA language models can generalize well on structure prediction tasks
  • 2025 Genome Biology - HydraRNA: a hybrid architecture based full-length RNA language model
  • 2025 Nature Communications - Generative and predictive neural networks for the design of functional RNA molecules
  • ✅ [RfamGen] 2024 Nature Methods - Deep generative design of RNA family sequences
  • 2024 Nature Machine Intelligence - Multi-purpose RNA language modelling with motif-aware pretraining and type-guided fine-tuning
  • ✅ 2024 Nature machine intelligence - A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions